This function queries Bioconductor for a list of available packages. Current and previous releases can be queried, up to Bioconductor 1.5.
Arguments
- release
character(1)
Bioconductor release to query for. Can be either a numeric code (like3.12) or one of two keywords:"release"and"devel".
See also
Functions for Bioconductor:
wood_bioc_dependencies(),
wood_bioc_releases(),
wood_bioc_version()
Functions that query available packages:
wood_core_packages(),
wood_cran_packages(),
wood_github_packages(),
wood_local_packages(),
wood_packages(),
wood_runiverse_packages(),
wood_url_packages()
Examples
# \donttest{
head(wood_bioc_packages())
#> [1] "a4" "a4Base" "a4Classif" "a4Core" "a4Preproc"
#> [6] "a4Reporting"
# is the same as
head(wood_bioc_packages("release"))
#> [1] "a4" "a4Base" "a4Classif" "a4Core" "a4Preproc"
#> [6] "a4Reporting"
# A glimpse in the future:
head(wood_bioc_packages("devel"))
#> [1] "a4" "a4Base" "a4Classif" "a4Core" "a4Preproc"
#> [6] "a4Reporting"
# Previous versions can be queried as well:
head(wood_bioc_packages("3.9"))
#> [1] "a4" "a4Base" "a4Classif" "a4Core" "a4Preproc"
#> [6] "a4Reporting"
# The oldest available version is 1.5:
wood_bioc_packages("1.5")
#> [1] "aCGH" "affy" "affycomp"
#> [4] "affydata" "affylmGUI" "affypdnn"
#> [7] "affyPLM" "altcdfenvs" "annaffy"
#> [10] "AnnBuilder" "annotate" "apComplex"
#> [13] "arrayMagic" "arrayQuality" "bim"
#> [16] "Biobase" "Biostrings" "ChromoViz"
#> [19] "convert" "ctc" "daMA"
#> [22] "DEDS" "DNAcopy" "DynDoc"
#> [25] "EBarrays" "ecolitk" "edd"
#> [28] "exprExternal" "externalVector" "factDesign"
#> [31] "gcrma" "genArise" "genefilter"
#> [34] "geneplotter" "GeneSpring" "GeneTraffic"
#> [37] "GeneTS" "GLAD" "globaltest"
#> [40] "goCluster" "GOstats" "goTools"
#> [43] "gpls" "graph" "GraphAT"
#> [46] "gtkWidgets" "HEM" "hexbin"
#> [49] "hopach" "Icens" "impute"
#> [52] "iSPlot" "KEGGSOAP" "limma"
#> [55] "limmaGUI" "LPE" "makecdfenv"
#> [58] "marray" "matchprobes" "MeasurementError.cor"
#> [61] "MergeMaid" "MLInterfaces" "msbase"
#> [64] "multtest" "nnNorm" "OLIN"
#> [67] "OLINgui" "pairseqsim" "pamr"
#> [70] "pickgene" "prada" "PROcess"
#> [73] "qvalue" "rama" "RBGL"
#> [76] "Rdbi" "RdbiPgSQL" "reposTools"
#> [79] "Resourcerer" "Rgraphviz" "RMAGEML"
#> [82] "ROC" "RSNPper" "Ruuid"
#> [85] "SAGElyzer" "siggenes" "simpleaffy"
#> [88] "SNAData" "splicegear" "stam"
#> [91] "stepNorm" "tkWidgets" "twilight"
#> [94] "vsn" "webbioc" "widgetInvoke"
#> [97] "widgetTools"
# }