This function queries Bioconductor for a list of available packages. Current and previous releases can be queried, up to Bioconductor 1.5.
See also
Functions for Bioconductor:
wood_bioc_dependencies(),
wood_bioc_releases(),
wood_bioc_version()
Functions that query available packages:
wood_core_packages(),
wood_cran_packages(),
wood_github_packages(),
wood_gitlab_packages(),
wood_local_packages(),
wood_packages(),
wood_runiverse_packages(),
wood_url_packages()
Examples
print(wood_bioc_packages(), max = 15)
#> [1] "a4" "a4Base" "a4Classif" "a4Core" "a4Preproc"
#> [6] "a4Reporting" "ABarray" "abseqR" "ABSSeq" "acde"
#> [11] "ACE" "aCGH" "ACME" "ADaCGH2" "ADAM"
#> [ reached getOption("max.print") -- omitted 2216 entries ]
# is the same as
print(wood_bioc_packages("release"), max = 15)
#> [1] "a4" "a4Base" "a4Classif" "a4Core" "a4Preproc"
#> [6] "a4Reporting" "ABarray" "abseqR" "ABSSeq" "acde"
#> [11] "ACE" "aCGH" "ACME" "ADaCGH2" "ADAM"
#> [ reached getOption("max.print") -- omitted 2216 entries ]
# A glimpse in the future:
print(wood_bioc_packages("devel"), max = 15)
#> [1] "a4" "a4Base" "a4Classif" "a4Core" "a4Preproc"
#> [6] "a4Reporting" "ABarray" "abseqR" "ABSSeq" "acde"
#> [11] "ACE" "aCGH" "ACME" "ADaCGH2" "ADAM"
#> [ reached getOption("max.print") -- omitted 2228 entries ]
# Previous versions can be queried as well:
print(wood_bioc_packages("3.9"), max = 15)
#> [1] "a4" "a4Base" "a4Classif" "a4Core"
#> [5] "a4Preproc" "a4Reporting" "ABAEnrichment" "ABarray"
#> [9] "abseqR" "ABSSeq" "acde" "ACE"
#> [13] "aCGH" "ACME" "ADaCGH2"
#> [ reached getOption("max.print") -- omitted 1720 entries ]
# The oldest available version is 1.8:
wood_bioc_packages("1.8")
#> [1] "aCGH" "adSplit" "affxparser"
#> [4] "affy" "affycomp" "affycoretools"
#> [7] "affydata" "affyio" "affylmGUI"
#> [10] "affypdnn" "affyPLM" "affyQCReport"
#> [13] "altcdfenvs" "annaffy" "AnnBuilder"
#> [16] "annotate" "apComplex" "applera"
#> [19] "arrayMagic" "arrayQuality" "beadarray"
#> [22] "bim" "Biobase" "biocViews"
#> [25] "bioDist" "biomaRt" "Biostrings"
#> [28] "bridge" "Category" "cellHTS"
#> [31] "cghMCR" "ChromoViz" "clusterStab"
#> [34] "CoCiteStats" "codelink" "convert"
#> [37] "copa" "ctc" "daMA"
#> [40] "DEDS" "diffGeneAnalysis" "DNAcopy"
#> [43] "DynDoc" "EBarrays" "EBImage"
#> [46] "ecolitk" "edd" "exprExternal"
#> [49] "externalVector" "factDesign" "fdrame"
#> [52] "gcrma" "genArise" "genefilter"
#> [55] "GeneMeta" "geneplotter" "GeneR"
#> [58] "geneRecommender" "GeneSpring" "GeneTraffic"
#> [61] "GeneTS" "GenomeBase" "GEOquery"
#> [64] "gff3Plotter" "GLAD" "GlobalAncova"
#> [67] "globaltest" "goCluster" "GOstats"
#> [70] "goTools" "gpls" "graph"
#> [73] "GraphAT" "Heatplus" "HEM"
#> [76] "hexbin" "hopach" "hypergraph"
#> [79] "Icens" "idiogram" "impute"
#> [82] "iSPlot" "KEGGSOAP" "limma"
#> [85] "limmaGUI" "LMGene" "logicFS"
#> [88] "LPE" "maanova" "macat"
#> [91] "maCorrPlot" "maDB" "made4"
#> [94] "makecdfenv" "MANOR" "MantelCorr"
#> [97] "marray" "maSigPro" "matchprobes"
#> [100] "MCRestimate" "MeasurementError.cor" "MergeMaid"
#> [103] "metaArray" "Mfuzz" "MiPP"
#> [106] "MLInterfaces" "mmgmos" "multtest"
#> [109] "MVCClass" "nnNorm" "nudge"
#> [112] "OCplus" "OLIN" "OLINgui"
#> [115] "ontoTools" "OrderedList" "pairseqsim"
#> [118] "pamr" "panp" "pathRender"
#> [121] "pdmclass" "pgUtils" "pickgene"
#> [124] "plgem" "plier" "prada"
#> [127] "PROcess" "qvalue" "rama"
#> [130] "RankProd" "RBGL" "Rdbi"
#> [133] "RdbiPgSQL" "reb" "reposTools"
#> [136] "Resourcerer" "rfcdmin" "rflowcyt"
#> [139] "Rgraphviz" "RLMM" "RMAGEML"
#> [142] "RMAPPER" "ROC" "RSNPper"
#> [145] "Ruuid" "safe" "SAGElyzer"
#> [148] "sagenhaft" "SBMLR" "ScISI"
#> [151] "siggenes" "simpleaffy" "simulatorAPMS"
#> [154] "sizepower" "SNAData" "snapCGH"
#> [157] "splicegear" "spotSegmentation" "sscore"
#> [160] "ssize" "stam" "stepNorm"
#> [163] "tilingArray" "timecourse" "tkWidgets"
#> [166] "twilight" "vsn" "webbioc"
#> [169] "widgetInvoke" "widgetTools" "xcms"
#> [172] "y2hStat"